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Notice of removal of previous versions of the software in the local disk of Shirokane1
Dear HGC supercomputer user,
December 26, 2012
Human Genome Center
Supercomputing sevices
At the supercomputer system Shirokane1, in order to reduce the amount of
local disk space
and improve security, we will carry out the removal of some of the older
version of the software.
Software that the previous version will be removed
* Java
* Mathematica
* NCBI Tool
* R
Nodes for which the previous version of the software will be deleted from
the local disk
* gw (Login node Shiorkane1)
* c (Distributed memory server Type-B Shirokane1)
* cl (Distributed memory server Type-A Shirokane1)
* web (Web server Type-A)
Shirokane2 (ngw, nc, ncl, and uv) and Web server Type-B are not relevant
to this notice.
Delete Date
* February 4, 2013
Latest version of these software and software in /usr/local/bin/ directory
such as "/usr/local/bin/java" are not subject to deletion. Available in
the future.
Version to be deleted is shown below.
If it contains the following path for your script, configuration files,
etc, please rewrite to make a run in the latest version below and
check the operation.
* previous versions of Java to be deleted
* /usr/local/package/java/j2sdk1.4.2_17_32
* /usr/local/package/java/j2sdk1.4.2_18_32
* /usr/local/package/java/jdk1.5.0_19_32
* /usr/local/package/java/jdk1.5.0_19_64
* /usr/local/package/java/jdk1.6.0_15_32
* /usr/local/package/java/jdk1.6.0_15_64
* /usr/local/package/java/jdk1.6.0_17_32
* /usr/local/package/java/jdk1.6.0_17_64
* /usr/local/package/java/jdk1.6.0_18_32
* /usr/local/package/java/jdk1.6.0_18_64
* /usr/local/package/java/jdk1.6.0_20_32
* /usr/local/package/java/jdk1.6.0_20_64
* /usr/local/package/java/jdk1.6.0_21_32
* /usr/local/package/java/jdk1.6.0_21_64
* /usr/local/package/java/jdk1.6.0_26_32
* /usr/local/package/java/jdk1.6.0_26_64
* /usr/local/package/java/jdk1.6.0_27_32
* /usr/local/package/java/jdk1.6.0_27_64
* /usr/local/package/java/jdk1.6.0_29_32
* /usr/local/package/java/jdk1.6.0_29_64
* /usr/local/package/java/jdk1.6.0_33_32
* /usr/local/package/java/jdk1.6.0_33_64
* /usr/local/package/java/jdk1.6.0_35_32
* /usr/local/package/java/jdk1.6.0_35_64
* /usr/local/package/java/jdk1.7.0_02_32
* /usr/local/package/java/jdk1.7.0_02_64
* /usr/local/package/java/jdk1.7.0_05_32
* /usr/local/package/java/jdk1.7.0_05_64
* /usr/local/package/java/jdk1.7.0_07_32
* /usr/local/package/java/jdk1.7.0_07_64
* previous versions of Mathematica to be deleted
* /usr/local/package/Wolfram/Mathematica/6.0
* /usr/local/package/Wolfram/Mathematica/7.0
* previous versions of NCBI Tool to be deleted
* /usr/local/package/ncbi_toolkit/2.2.16
* /usr/local/package/ncbi_toolkit/2.2.19
* /usr/local/package/ncbi_toolkit/2.2.20
* /usr/local/package/ncbi_toolkit/2.2.22
* previous versions of R to be deleted
* /usr/local/package/r/2.8.0_gccl
* /usr/local/package/r/2.8.0_icc
* /usr/local/package/r/2.10.1_icc_mkl
* /usr/local/package/r/2.11.1_gcc
* /usr/local/package/r/2.12.0_gcc
* /usr/local/package/r/2.12.0_icc_mkl
* /usr/local/package/r/2.13.0_gcc
* /usr/local/package/r/2.13.0_icc
* /usr/local/package/r/2.13.0_icc_mkl
The path of the latest version of these software are as follows.
You need to be rewritten to the following path if your script or
configuration files
contain the path to the previous version of the above.
* The path of the latest version of Java
* /usr/local/package/java/current5
* /usr/local/package/java/current5_32
* /usr/local/package/java/current6
* /usr/local/package/java/current6_32
* /usr/local/package/java/current7
* /usr/local/package/java/current7_32
* The path of the latest version of Mathematica
* /usr/local/package/Wolfram/Mathematica/current
* The path of the latest version of NCBI Tool
* /usr/local/package/ncbi_toolkit/current
* The path of the latest version of R
* /usr/local/package/r/current_icc
* /usr/local/package/r/current_icc_mkl
* /usr/local/package/r/current_gcc
If you have any questions, please contact us.
Thank you for using the services of the center.
-------------------------
Human Genome Center
Supercomputing services
Tel: 03-5449-5620
(ut-Tel): 75620
E-mail: support@hgc.jp
-------------------------
